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c1galt1c1 C1GALT1-specific chaperone 1 [ Plectropomus leopardus (leopard coralgrouper) ]

Gene ID: 121947978, updated on 22-Mar-2024

Summary

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Gene symbol
c1galt1c1
Gene description
C1GALT1-specific chaperone 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Plectropomus leopardus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Plectropomus
Orthologs
human zebrafish all
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Genomic context

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See c1galt1c1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
100 current YSFRI_Pleo_2.0 (GCF_008729295.1) 9 NC_056471.1 (22945153..22949213)

Chromosome 9 - NC_056471.1Genomic Context describing neighboring genes Neighboring gene protein eva-1 homolog C Neighboring gene chloride intracellular channel 2 Neighboring gene urotensin-related peptide 1 Neighboring gene MCTS1 re-initiation and release factor Neighboring gene cullin 4B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056471.1 Chromosome 9 Reference YSFRI_Pleo_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: C1GALT1-specific chaperone 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Plectropomus leopardus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YSFRI_Pleo_2.0 Primary Assembly

Genomic

  1. NC_056471.1 Reference YSFRI_Pleo_2.0 Primary Assembly

    Range
    22945153..22949213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042493194.1 → XP_042349128.1  LOW QUALITY PROTEIN: C1GALT1-specific chaperone 1

    Conserved Domains (1) summary
    cl21608
    Location:135 → 231
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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