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LOC121946171 plectin-like [ Plectropomus leopardus (leopard coralgrouper) ]

Gene ID: 121946171, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121946171
Gene description
plectin-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Plectropomus leopardus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Plectropomus
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Genomic context

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See LOC121946171 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
35
Annotation release Status Assembly Chr Location
100 current YSFRI_Pleo_2.0 (GCF_008729295.1) 7 NC_056469.1 (8917836..8989452)

Chromosome 7 - NC_056469.1Genomic Context describing neighboring genes Neighboring gene hepcidin-like Neighboring gene hepcidin-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene riboflavin transporter 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056469.1 Chromosome 7 Reference YSFRI_Pleo_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Plectropomus leopardus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YSFRI_Pleo_2.0 Primary Assembly

Genomic

  1. NC_056469.1 Reference YSFRI_Pleo_2.0 Primary Assembly

    Range
    8917836..8989452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042490639.1 → XP_042346573.1  LOW QUALITY PROTEIN: plectin-like

    Conserved Domains (9) summary
    pfam05483
    Location:2337 → 2809
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    PTZ00121
    Location:2576 → 3554
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5600 → 5634
    PLEC; Plectin repeat
    COG1196
    Location:3226 → 3902
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:1337 → 1643
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1919 → 2108
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam05109
    Location:529 → 794
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl38594
    Location:1716 → 1798
    DUF5357; Family of unknown function (DUF5357)
Nucleotide Protein
Heading Accession and Version

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