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POLR2A RNA polymerase II subunit A [ Sceloporus undulatus (fence lizard) ]

Gene ID: 121933599, updated on 22-Mar-2024

Summary

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Gene symbol
POLR2A
Gene description
RNA polymerase II subunit A
Gene type
protein coding
RefSeq status
MODEL
Organism
Sceloporus undulatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Phrynosomatidae; Phrynosomatinae; Sceloporus
Orthologs
human mouse all
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Genomic context

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See POLR2A in Genome Data Viewer
Location:
chromosome: 6
Exon count:
29
Annotation release Status Assembly Chr Location
100 current SceUnd_v1.1 (GCF_019175285.1) 6 NC_056527.1 (116919751..116952909, complement)

Chromosome 6 - NC_056527.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon UAG) Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene zinc finger and BTB domain containing 4 Neighboring gene solute carrier family 35 member G3-like Neighboring gene sex hormone binding globulin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056527.1 Chromosome 6 Reference SceUnd_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sceloporus undulatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SceUnd_v1.1

Genomic

  1. NC_056527.1 Reference SceUnd_v1.1

    Range
    116919751..116952909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042473568.1 → XP_042329502.1  DNA-directed RNA polymerase II subunit RPB1

    Conserved Domains (5) summary
    cd02584
    Location:1057 → 1475
    RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
    smart01104
    Location:1490 → 1609
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    PRK02597
    Location:763 → 1116
    rpoC2; DNA-directed RNA polymerase subunit beta'; Provisional
    cd02733
    Location:18 → 875
    RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
    pfam05109
    Location:1853 → 1958
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
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