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UBXN2B UBX domain protein 2B [ Sceloporus undulatus (fence lizard) ]

Gene ID: 121927813, updated on 22-Mar-2024

Summary

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Gene symbol
UBXN2B
Gene description
UBX domain protein 2B
Gene type
protein coding
RefSeq status
MODEL
Organism
Sceloporus undulatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Phrynosomatidae; Phrynosomatinae; Sceloporus
Orthologs
human mouse all
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Genomic context

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See UBXN2B in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
100 current SceUnd_v1.1 (GCF_019175285.1) 4 NC_056525.1 (200893557..200912406)

Chromosome 4 - NC_056525.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121929955 Neighboring gene family with sequence similarity 110 member B Neighboring gene cytochrome P450 7A1 Neighboring gene syndecan binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056525.1 Chromosome 4 Reference SceUnd_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sceloporus undulatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SceUnd_v1.1

Genomic

  1. NC_056525.1 Reference SceUnd_v1.1

    Range
    200893557..200912406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042461725.1 → XP_042317659.1  UBX domain-containing protein 2B isoform X1

    Conserved Domains (2) summary
    smart00553
    Location:187 → 279
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:297 → 378
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_042461726.1 → XP_042317660.1  UBX domain-containing protein 2B isoform X2

    Conserved Domains (2) summary
    smart00553
    Location:170 → 262
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:280 → 361
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
Heading Accession and Version

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