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LOC121926319 pulmonary surfactant-associated protein D-like [ Sceloporus undulatus (fence lizard) ]

Gene ID: 121926319, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121926319
Gene description
pulmonary surfactant-associated protein D-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Sceloporus undulatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Phrynosomatidae; Phrynosomatinae; Sceloporus
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Genomic context

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See LOC121926319 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
100 current SceUnd_v1.1 (GCF_019175285.1) 3 NC_056524.1 (156595304..156606553)

Chromosome 3 - NC_056524.1Genomic Context describing neighboring genes Neighboring gene pulmonary surfactant-associated protein D-like Neighboring gene pulmonary surfactant-associated protein D-like Neighboring gene pulmonary surfactant-associated protein D-like Neighboring gene mannose-binding protein-like Neighboring gene pulmonary surfactant-associated protein A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056524.1 Chromosome 3 Reference SceUnd_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in surfactant homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sceloporus undulatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SceUnd_v1.1

Genomic

  1. NC_056524.1 Reference SceUnd_v1.1

    Range
    156595304..156606553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042459198.1 → XP_042315132.1  pulmonary surfactant-associated protein D-like

    Conserved Domains (2) summary
    pfam09006
    Location:102 → 144
    Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerisation
    cl02432
    Location:137 → 255
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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