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LOC121879857 carotenoid isomerooxygenase-like [ Homarus americanus (American lobster) ]

Gene ID: 121879857, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121879857
Gene description
carotenoid isomerooxygenase-like
Locus tag
Hamer_G019845
See related
EnsemblRapid:LOC121879857
Gene type
protein coding
RefSeq status
MODEL
Organism
Homarus americanus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus
Also known as
ninaB-L2
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Genomic context

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See LOC121879857 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current GMGI_Hamer_2.0 (GCF_018991925.1) Unplaced Scaffold NW_024747794.1 (81875..101064, complement)

NW_024747794.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121879861 Neighboring gene uncharacterized LOC121879863 Neighboring gene mucin-5B-like Neighboring gene cell adhesion molecule 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024747794 Unplaced Scaffold Reference GMGI_Hamer_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carotenoid isomerooxygenase-like
Names
Carotenoid isomerooxygenase-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homarus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GMGI_Hamer_2.0 Primary Assembly

Genomic

  1. NW_024747794.1 Reference GMGI_Hamer_2.0 Primary Assembly

    Range
    81875..101064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042386643.1 → XP_042242577.1  carotenoid isomerooxygenase-like

    UniProtKB/TrEMBL
    A0A8J5JQX8
    Related
    XP_042242577.1, XM_042386643.1
    Conserved Domains (1) summary
    cl10080
    Location:13 → 521
    RPE65; Retinal pigment epithelial membrane protein
Nucleotide Protein
Heading Accession and Version

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