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LOC121877976 irregular chiasm C-roughest protein-like [ Homarus americanus (American lobster) ]

Gene ID: 121877976, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121877976
Gene description
irregular chiasm C-roughest protein-like
Locus tag
Hamer_G021425
See related
EnsemblRapid:LOC121877976
Gene type
protein coding
RefSeq status
MODEL
Organism
Homarus americanus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus
Also known as
rst-L1
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Genomic context

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See LOC121877976 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current GMGI_Hamer_2.0 (GCF_018991925.1) Unplaced Scaffold NW_024744529.1 (61446..159139)

NW_024744529.1Genomic Context describing neighboring genes Neighboring gene basic salivary proline-rich protein 1-like Neighboring gene basic proline-rich protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024744529 Unplaced Scaffold Reference GMGI_Hamer_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Prediction of a neuropeptidome for the eyestalk ganglia of the lobster Homarus americanus using a tissue-specific de novo assembled transcriptome. Christie AE, et al. Gen Comp Endocrinol, 2017 Mar 1. PMID 27823957, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein-like
Names
Irregular chiasm C-roughest protein-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homarus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GMGI_Hamer_2.0 Primary Assembly

Genomic

  1. NW_024744529.1 Reference GMGI_Hamer_2.0 Primary Assembly

    Range
    61446..159139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042383936.1 → XP_042239870.1  irregular chiasm C-roughest protein-like isoform X1

    UniProtKB/TrEMBL
    A0A8J5MPL3
    Related
    XP_042239870.1, XM_042383936.1
    Conserved Domains (4) summary
    smart00408
    Location:331 → 385
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 125
    IG; Immunoglobulin
    cd00096
    Location:418 → 422
    Ig; Ig strand B [structural motif]
    cl11960
    Location:400 → 494
    Ig; Immunoglobulin domain

  2. XM_042383937.1 → XP_042239871.1  irregular chiasm C-roughest protein-like isoform X2

    UniProtKB/TrEMBL
    A0A8J5MPL3
    Related
    XP_042239871.1, XM_042383937.1
    Conserved Domains (4) summary
    smart00408
    Location:331 → 385
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 125
    IG; Immunoglobulin
    cd00096
    Location:418 → 422
    Ig; Ig strand B [structural motif]
    cl11960
    Location:400 → 494
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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