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Hs6st heparan sulfate 6-O-sulfotransferase [ Homarus americanus (American lobster) ]

Gene ID: 121867294, updated on 2-Jul-2024

Summary

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Gene symbol
Hs6st
Gene description
heparan sulfate 6-O-sulfotransferase
Locus tag
Hamer_G002611
See related
EnsemblRapid:LOC121867294
Gene type
protein coding
RefSeq status
MODEL
Organism
Homarus americanus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus
Also known as
HS6ST1-L
Orthologs
fruit fly all
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Genomic context

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See Hs6st in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current GMGI_Hamer_2.0 (GCF_018991925.1) Unplaced Scaffold NW_024730668.1 (20475636..20488134, complement)

NW_024730668.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase kinX Neighboring gene uncharacterized LOC121867122 Neighboring gene neuropeptide receptor myosuppressin Neighboring gene zinc transporter 2-like Neighboring gene transfer RNA aspartic acid (anticodon GUC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024730668 Unplaced Scaffold Reference GMGI_Hamer_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 2-like
Names
Heparan-sulfate 6-O-sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homarus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GMGI_Hamer_2.0 Primary Assembly

Genomic

  1. NW_024730668.1 Reference GMGI_Hamer_2.0 Primary Assembly

    Range
    20475636..20488134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042367189.1 → XP_042223123.1  heparan-sulfate 6-O-sulfotransferase 2-like

    UniProtKB/TrEMBL
    A0A8J5K6D4
    Related
    XP_042223123.1, XM_042367189.1
Nucleotide Protein
Heading Accession and Version

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