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LOC121855918 gamma-butyrobetaine dioxygenase-like [ Homarus americanus (American lobster) ]

Gene ID: 121855918, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121855918
Gene description
gamma-butyrobetaine dioxygenase-like
Locus tag
Hamer_G015061
See related
EnsemblRapid:LOC121855918
Gene type
protein coding
RefSeq status
MODEL
Organism
Homarus americanus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus
Also known as
Bbox1-L2
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Genomic context

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See LOC121855918 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current GMGI_Hamer_2.0 (GCF_018991925.1) Unplaced Scaffold NW_024754704.1 (3723986..3758649, complement)

NW_024754704.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121856009 Neighboring gene nucleolin-like Neighboring gene uncharacterized LOC121856000 Neighboring gene extensin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024754704 Unplaced Scaffold Reference GMGI_Hamer_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Neuropeptidergic Signaling in the American Lobster Homarus americanus: New Insights from High-Throughput Nucleotide Sequencing. Christie AE, et al. PLoS One, 2015. PMID 26716450, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-butyrobetaine dioxygenase-like
Names
Gamma-butyrobetaine dioxygenase-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homarus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GMGI_Hamer_2.0 Primary Assembly

Genomic

  1. NW_024754704.1 Reference GMGI_Hamer_2.0 Primary Assembly

    Range
    3723986..3758649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042351113.1 → XP_042207047.1  gamma-butyrobetaine dioxygenase-like isoform X1

    UniProtKB/TrEMBL
    A0A8J5MKF5
    Related
    XP_042207047.1, XM_042351113.1
    Conserved Domains (1) summary
    cl00184
    Location:95 → 462
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...

  2. XM_042351114.1 → XP_042207048.1  gamma-butyrobetaine dioxygenase-like isoform X2

    Related
    XP_042207048.1, XM_042351114.1
    Conserved Domains (1) summary
    cl00184
    Location:95 → 366
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...

RNA

  1. XR_006086863.1 RNA Sequence

    Related
    XR_006086863.1
Nucleotide Protein
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