U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC121855089 irregular chiasm C-roughest protein-like [ Homarus americanus (American lobster) ]

Gene ID: 121855089, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC121855089
Gene description
irregular chiasm C-roughest protein-like
See related
EnsemblRapid:LOC121855089
Gene type
protein coding
RefSeq status
MODEL
Organism
Homarus americanus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC121855089 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current GMGI_Hamer_2.0 (GCF_018991925.1) Unplaced Scaffold NW_024752436.1 (6806..229182, complement)

NW_024752436.1Genomic Context describing neighboring genes Neighboring gene protein MTL1-like Neighboring gene mucin-2-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024752436 Unplaced Scaffold Reference GMGI_Hamer_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
irregular chiasm C-roughest protein-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Homarus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GMGI_Hamer_2.0 Primary Assembly

Genomic

  1. NW_024752436.1 Reference GMGI_Hamer_2.0 Primary Assembly

    Range
    6806..229182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042349917.1 → XP_042205851.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    XP_042205851.1, XM_042349917.1
    Conserved Domains (4) summary
    smart00408
    Location:351 → 402
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:45 → 138
    IG; Immunoglobulin
    cd00096
    Location:355 → 359
    Ig; Ig strand B [structural motif]
    cl11960
    Location:164 → 239
    Ig; Immunoglobulin domain

  2. XM_042349919.1 → XP_042205853.1  irregular chiasm C-roughest protein-like isoform X3

    Related
    XP_042205853.1, XM_042349919.1
    Conserved Domains (4) summary
    smart00408
    Location:351 → 402
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:45 → 138
    IG; Immunoglobulin
    cd00096
    Location:355 → 359
    Ig; Ig strand B [structural motif]
    cl11960
    Location:164 → 239
    Ig; Immunoglobulin domain

  3. XM_042349918.1 → XP_042205852.1  irregular chiasm C-roughest protein-like isoform X2

    Related
    XP_042205852.1, XM_042349918.1
    Conserved Domains (4) summary
    smart00408
    Location:351 → 402
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:45 → 138
    IG; Immunoglobulin
    cd00096
    Location:355 → 359
    Ig; Ig strand B [structural motif]
    cl11960
    Location:164 → 239
    Ig; Immunoglobulin domain

  4. XM_042349916.1 → XP_042205850.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    XP_042205850.1, XM_042349916.1
    Conserved Domains (4) summary
    smart00408
    Location:351 → 402
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:45 → 138
    IG; Immunoglobulin
    cd00096
    Location:355 → 359
    Ig; Ig strand B [structural motif]
    cl11960
    Location:164 → 239
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases