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ARHGEF4-AS1 ARHGEF4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 121853076, updated on 27-Aug-2024

Summary

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Official Symbol
ARHGEF4-AS1provided by HGNC
Official Full Name
ARHGEF4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55716
See related
Ensembl:ENSG00000233221
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2q21.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (130830973..130836994, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (131265212..131271238, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907891 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:131543220-131543720 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11962 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11963 Neighboring gene CYCS pseudogene 8 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131571909-131572408 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:131577629-131578232 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:131580955-131581530 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:131581531-131582108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131583263-131583838 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131583839-131584416 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:131584417-131584994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131603815-131604349 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131605209-131605886 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:131607901-131608435 Neighboring gene Rho guanine nucleotide exchange factor 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131639059-131639560 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:131654824-131655422 Neighboring gene small Cajal body-specific RNA 4 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:131706954-131707281 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:131724236-131724855 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:131743536-131744354 Neighboring gene small integral membrane protein 39

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Clone Names

  • FLJ33681

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186036.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010984, AC133785
    Related
    ENST00000429282.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    130830973..130836994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    131265212..131271238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases