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LOC121757076 carboxyl-terminal-processing peptidase 1, chloroplastic-like [ Salvia splendens ]

Gene ID: 121757076, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121757076
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic-like
Locus tag
SASPL_132639
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvia splendens
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salviinae; Salvia; Salvia subgen. Calosphace; core Calosphace
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Genomic context

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See LOC121757076 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
100 current SspV2 (GCF_004379255.1) 12 NC_056043.1 (3317099..3329001)

Chromosome 12 - NC_056043.1Genomic Context describing neighboring genes Neighboring gene coatomer subunit zeta-1-like Neighboring gene uncharacterized LOC121759370 Neighboring gene uncharacterized LOC121759371 Neighboring gene PLASMODESMATA CALLOSE-BINDING PROTEIN 1-like Neighboring gene cold-regulated 413 inner membrane protein 2, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056043.1 Chromosome 12 Reference SspV2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 1, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvia splendens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SspV2 Primary Assembly

Genomic

  1. NC_056043.1 Reference SspV2 Primary Assembly

    Range
    3317099..3329001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042152563.1 → XP_042008497.1  carboxyl-terminal-processing peptidase 1, chloroplastic-like isoform X2

    Conserved Domains (1) summary
    PLN00049
    Location:106 → 458
    PLN00049; carboxyl-terminal processing protease; Provisional

  2. XM_042152562.1 → XP_042008496.1  carboxyl-terminal-processing peptidase 1, chloroplastic-like isoform X1

    Conserved Domains (1) summary
    PLN00049
    Location:106 → 459
    PLN00049; carboxyl-terminal processing protease; Provisional

  3. XM_042152564.1 → XP_042008498.1  carboxyl-terminal-processing peptidase 1, chloroplastic-like isoform X3

    Conserved Domains (1) summary
    PLN00049
    Location:35 → 277
    PLN00049; carboxyl-terminal processing protease; Provisional
Nucleotide Protein
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