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Chd1 chromodomain-helicase-DNA-binding protein 1 [ Aricia agestis (brown argus) ]

Gene ID: 121730617, updated on 24-May-2024

Summary

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Gene symbol
Chd1
Gene description
chromodomain-helicase-DNA-binding protein 1
See related
EnsemblRapid:ENSAAGG00005006964
Gene type
protein coding
RefSeq status
MODEL
Organism
Aricia agestis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Aricia
Orthologs
fruit fly all
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Genomic context

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See Chd1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
24
Annotation release Status Assembly Chr Location
100 current ilAriAges1.1 (GCF_905147365.1) 9 NC_056414.1 (11026034..11045631)

Chromosome 9 - NC_056414.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121730622 Neighboring gene CD2 antigen cytoplasmic tail-binding protein 2 homolog holn1 Neighboring gene agrin-like Neighboring gene agrin-like Neighboring gene uncharacterized LOC121730254

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056414.1 Chromosome 9 Reference ilAriAges1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aricia agestis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ilAriAges1.1

Genomic

  1. NC_056414.1 Reference ilAriAges1.1

    Range
    11026034..11045631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042119738.1 → XP_041975672.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    Conserved Domains (5) summary
    PLN03142
    Location:451 → 1042
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK14086
    Location:1713 → 1803
    dnaA; chromosomal replication initiator protein DnaA
    cd18659
    Location:373 → 428
    CD2_tandem; repeat 2 of paired tandem chromodomains
    cd18666
    Location:255 → 339
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd17993
    Location:468 → 684
    DEXHc_CHD1_2; DEXH-box helicase domain of the chromodomain helicase DNA binding proteins 1 and 2, and similar proteins

  2. XM_042119739.1 → XP_041975673.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    Related
    ENSAAGP00005010289.1, ENSAAGT00005011383.1
    Conserved Domains (5) summary
    PLN03142
    Location:450 → 1041
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK14086
    Location:1712 → 1803
    dnaA; chromosomal replication initiator protein DnaA
    cd18659
    Location:372 → 427
    CD2_tandem; repeat 2 of paired tandem chromodomains
    cd18666
    Location:254 → 338
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd17993
    Location:467 → 683
    DEXHc_CHD1_2; DEXH-box helicase domain of the chromodomain helicase DNA binding proteins 1 and 2, and similar proteins

  3. XM_042119740.1 → XP_041975674.1  chromodomain-helicase-DNA-binding protein 1 isoform X3

    Conserved Domains (5) summary
    PLN03142
    Location:450 → 1041
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK14086
    Location:1712 → 1802
    dnaA; chromosomal replication initiator protein DnaA
    cd18659
    Location:372 → 427
    CD2_tandem; repeat 2 of paired tandem chromodomains
    cd18666
    Location:254 → 338
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd17993
    Location:467 → 683
    DEXHc_CHD1_2; DEXH-box helicase domain of the chromodomain helicase DNA binding proteins 1 and 2, and similar proteins

  4. XM_042119741.1 → XP_041975675.1  chromodomain-helicase-DNA-binding protein 1 isoform X4

    Conserved Domains (5) summary
    PLN03142
    Location:450 → 1041
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK14086
    Location:1689 → 1779
    dnaA; chromosomal replication initiator protein DnaA
    cd18659
    Location:372 → 427
    CD2_tandem; repeat 2 of paired tandem chromodomains
    cd18666
    Location:254 → 338
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd17993
    Location:467 → 683
    DEXHc_CHD1_2; DEXH-box helicase domain of the chromodomain helicase DNA binding proteins 1 and 2, and similar proteins
Nucleotide Protein
Heading Accession and Version

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