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hic1 hypermethylated in cancer 1 [ Alosa sapidissima (American shad) ]

Gene ID: 121684048, updated on 22-Mar-2024

Summary

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Gene symbol
hic1
Gene description
hypermethylated in cancer 1
See related
EnsemblRapid:ENSASDG00000033408
Gene type
protein coding
RefSeq status
MODEL
Organism
Alosa sapidissima
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa
Orthologs
human zebrafish all
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Genomic context

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See hic1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fAloSap1.pri (GCF_018492685.1) 15 NC_055971.1 (11131875..11146885, complement)

Chromosome 15 - NC_055971.1Genomic Context describing neighboring genes Neighboring gene reticulon 4 receptor-like 1b Neighboring gene diphthamide biosynthesis 1 Neighboring gene TSR1 ribosome maturation factor Neighboring gene TAO kinase 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_055971.1 Chromosome 15 Reference fAloSap1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypermethylated in cancer 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alosa sapidissima Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAloSap1.pri Primary Assembly

Genomic

  1. NC_055971.1 Reference fAloSap1.pri Primary Assembly

    Range
    11131875..11146885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042063977.1 → XP_041919911.1  hypermethylated in cancer 1 protein isoform X2

    Related
    ENSASDP00000008824.1, ENSASDT00000034998.1
    Conserved Domains (5) summary
    smart00355
    Location:557 → 579
    ZnF_C2H2; zinc finger
    PHA03247
    Location:164 → 340
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:583 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:559 → 579
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:19 → 141
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)

  2. XM_042063978.1 → XP_041919912.1  hypermethylated in cancer 1 protein isoform X3

    Related
    ENSASDP00000046107.1, ENSASDT00000035000.1
    Conserved Domains (5) summary
    smart00355
    Location:545 → 567
    ZnF_C2H2; zinc finger
    PHA03247
    Location:152 → 328
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:571 → 619
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:547 → 567
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:7 → 129
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)

  3. XM_042063976.1 → XP_041919910.1  hypermethylated in cancer 1 protein isoform X1

    Conserved Domains (5) summary
    smart00355
    Location:568 → 590
    ZnF_C2H2; zinc finger
    PHA03247
    Location:175 → 351
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:594 → 642
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:570 → 590
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:30 → 152
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)

  4. XM_042063979.1 → XP_041919913.1  hypermethylated in cancer 1 protein isoform X3

    Related
    ENSASDP00000046109.1, ENSASDT00000035002.1
    Conserved Domains (5) summary
    smart00355
    Location:545 → 567
    ZnF_C2H2; zinc finger
    PHA03247
    Location:152 → 328
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:571 → 619
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:547 → 567
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:7 → 129
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)
Nucleotide Protein
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