U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

chd1 chromodomain helicase DNA binding protein 1 [ Alosa sapidissima (American shad) ]

Gene ID: 121679672, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
chd1
Gene description
chromodomain helicase DNA binding protein 1
See related
EnsemblRapid:ENSASDG00000001435
Gene type
protein coding
RefSeq status
MODEL
Organism
Alosa sapidissima
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See chd1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
39
Annotation release Status Assembly Chr Location
100 current fAloSap1.pri (GCF_018492685.1) 13 NC_055969.1 (12647033..12670565, complement)

Chromosome 13 - NC_055969.1Genomic Context describing neighboring genes Neighboring gene decapping mRNA 2 Neighboring gene receptor accessory protein 5 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 Neighboring gene peptidylglycine alpha-amidating monooxygenase Neighboring gene uncharacterized LOC121680467

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_055969.1 Chromosome 13 Reference fAloSap1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
chromodomain-helicase-DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Alosa sapidissima Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAloSap1.pri Primary Assembly

Genomic

  1. NC_055969.1 Reference fAloSap1.pri Primary Assembly

    Range
    12647033..12670565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042058572.1 → XP_041914506.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    Conserved Domains (3) summary
    PLN03142
    Location:471 → 1000
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18661
    Location:389 → 445
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:272 → 348
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

  2. XM_042058569.1 → XP_041914503.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    Related
    ENSASDP00000013120.1, ENSASDT00000076411.1
    Conserved Domains (4) summary
    PLN03142
    Location:471 → 1000
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    pfam17069
    Location:1659 → 1818
    RSRP; Arginine/Serine-Rich protein 1
    cd18661
    Location:389 → 445
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:272 → 348
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

  3. XM_042058571.1 → XP_041914505.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    Conserved Domains (4) summary
    PLN03142
    Location:471 → 1000
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    pfam17069
    Location:1659 → 1818
    RSRP; Arginine/Serine-Rich protein 1
    cd18661
    Location:389 → 445
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:272 → 348
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

  4. XM_042058570.1 → XP_041914504.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    Related
    ENSASDP00000013124.1, ENSASDT00000076407.1
    Conserved Domains (4) summary
    PLN03142
    Location:471 → 1000
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    pfam17069
    Location:1659 → 1818
    RSRP; Arginine/Serine-Rich protein 1
    cd18661
    Location:389 → 445
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:272 → 348
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.