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LOC121585723 patatin-like phospholipase domain-containing protein 4 [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121585723, updated on 18-Sep-2024

Summary

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Gene symbol
LOC121585723
Gene description
patatin-like phospholipase domain-containing protein 4
See related
EnsemblRapid:ENSCCFG00005000945
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
Also known as
pnpla4
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Genomic context

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See LOC121585723 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 6 NC_059197.1 (52508193..52511073, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 17 NC_055083.1 (71289824..71292757)

Chromosome 6 - NC_059197.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121586953 Neighboring gene steryl-sulfatase Neighboring gene uncharacterized LOC121535925 Neighboring gene neuroligin 4 X-linked a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables retinyl-palmitate esterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 4
Names
patatin-like phospholipase domain containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059197.1 Reference ASM2061545v1 Primary Assembly

    Range
    52508193..52511073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041902044.2 → XP_041757978.2  patatin-like phospholipase domain-containing protein 4

    Related
    ENSCCFP00005002016.1, ENSCCFT00005002045.1
Nucleotide Protein
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