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sfrp1a secreted frizzled-related protein 1a [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121585046, updated on 28-May-2024

Summary

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Gene symbol
sfrp1a
Gene description
secreted frizzled-related protein 1a
See related
EnsemblRapid:ENSCCFG00005052289
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
Orthologs
zebrafish all
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Genomic context

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See sfrp1a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 16 NC_059207.1 (49038704..49063508, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 16 NC_055082.1 (47719681..47744090, complement)

Chromosome 16 - NC_059207.1Genomic Context describing neighboring genes Neighboring gene zinc finger matrin-type protein 4-like Neighboring gene uncharacterized LOC121584212 Neighboring gene golgin subfamily A member 7 Neighboring gene lysyl oxidase homolog 2B Neighboring gene uncharacterized LOC121585049

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059207.1 Reference ASM2061545v1 Primary Assembly

    Range
    49038704..49063508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041901385.1 → XP_041757319.1  secreted frizzled-related protein 1a

    Related
    ENSCCFP00005119652.1, ENSCCFT00005130483.1
    Conserved Domains (2) summary
    cd03580
    Location:178 → 302
    NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
    cl02447
    Location:46 → 169
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
Nucleotide Protein
Heading Accession and Version

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