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LOC121582518 VIP36-like protein [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121582518, updated on 19-Jun-2024

Summary

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Gene symbol
LOC121582518
Gene description
VIP36-like protein
See related
EnsemblRapid:ENSCCFG00005026038
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121582518 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 15 NC_059206.1 (37046170..37053597)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 15 NC_055081.1 (49263498..49270925)

Chromosome 15 - NC_059206.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 13-like Neighboring gene mitochondrial fission process protein 1 Neighboring gene WW domain-binding protein 1 Neighboring gene paired box protein Pax-8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059206.1 Reference ASM2061545v1 Primary Assembly

    Range
    37046170..37053597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041898370.2 → XP_041754304.1  VIP36-like protein isoform X1

    Related
    ENSCCFP00005054710.1, ENSCCFT00005059974.1
    Conserved Domains (1) summary
    cl14058
    Location:31 → 290
    lectin_L-type; legume lectins

  2. XM_041898371.2 → XP_041754305.1  VIP36-like protein isoform X2

    Related
    ENSCCFP00005054711.1, ENSCCFT00005059975.1
    Conserved Domains (1) summary
    cl14058
    Location:31 → 279
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases