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ndst1b N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1b [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121579661, updated on 28-May-2024

Summary

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Gene symbol
ndst1b
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1b
See related
EnsemblRapid:ENSCCFG00005047358
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 13 NC_059204.1 (47666760..47740045, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 13 NC_055079.1 (42613883..42715122, complement)

Chromosome 13 - NC_059204.1Genomic Context describing neighboring genes Neighboring gene SLC35A4 upstream open reading frame protein Neighboring gene 40S ribosomal protein S14 Neighboring gene pre-mRNA-splicing factor RBM22 Neighboring gene ADP-ribosylation factor-like protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059204.1 Reference ASM2061545v1 Primary Assembly

    Range
    47666760..47740045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041894449.2 → XP_041750383.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1b

    Related
    ENSCCFP00005109576.1, ENSCCFT00005118644.1

  2. XM_041894450.2 → XP_041750384.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1b

Nucleotide Protein
Heading Accession and Version

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