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LOC121579416 delta-sarcoglycan [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121579416, updated on 28-May-2024

Summary

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Gene symbol
LOC121579416
Gene description
delta-sarcoglycan
See related
EnsemblRapid:ENSCCFG00005046397
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121579416 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 13 NC_059204.1 (19565815..19852594, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 13 NC_055079.1 (32374075..32660463, complement)

Chromosome 13 - NC_059204.1Genomic Context describing neighboring genes Neighboring gene arginine--tRNA ligase, cytoplasmic Neighboring gene rho GTPase-activating protein 7-like Neighboring gene 39S ribosomal protein L22, mitochondrial-like Neighboring gene gem-associated protein 5 Neighboring gene intelectin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059204.1 Reference ASM2061545v1 Primary Assembly

    Range
    19565815..19852594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041893999.2 → XP_041749933.1  delta-sarcoglycan

  2. XM_041893998.2 → XP_041749932.1  delta-sarcoglycan

    Related
    ENSCCFP00005106937.1, ENSCCFT00005115745.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases