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LOC121578416 cytokine-inducible SH2-containing protein-like [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121578416, updated on 28-May-2024

Summary

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Gene symbol
LOC121578416
Gene description
cytokine-inducible SH2-containing protein-like
See related
EnsemblRapid:ENSCCFG00005027157
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121578416 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 12 NC_059203.1 (46459961..46462991, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 12 NC_055078.1 (62331661..62334691, complement)

Chromosome 12 - NC_059203.1Genomic Context describing neighboring genes Neighboring gene zinc finger, MYND-type containing 10 Neighboring gene GATOR complex protein NPRL2-like Neighboring gene twinfilin-2 Neighboring gene WD repeat-containing protein 82

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine-inducible SH2-containing protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059203.1 Reference ASM2061545v1 Primary Assembly

    Range
    46459961..46462991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041892780.2 → XP_041748714.1  cytokine-inducible SH2-containing protein-like isoform X1

    Related
    ENSCCFP00005057642.1, ENSCCFT00005062999.1
    Conserved Domains (2) summary
    smart00969
    Location:183 → 216
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    cd10718
    Location:57 → 144
    SH2_CIS; Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

  2. XM_041892781.2 → XP_041748715.1  cytokine-inducible SH2-containing protein-like isoform X2

    Conserved Domains (2) summary
    smart00969
    Location:161 → 194
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    cd10718
    Location:35 → 122
    SH2_CIS; Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)
Nucleotide Protein
Heading Accession and Version

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