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LOC121575010 host cell factor 1-like [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121575010, updated on 28-May-2024

Summary

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Gene symbol
LOC121575010
Gene description
host cell factor 1-like
See related
EnsemblRapid:ENSCCFG00005026487
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121575010 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
27
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 10 NC_059201.1 (31415571..31429829, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 10 NC_055076.1 (24090641..24104888, complement)

Chromosome 10 - NC_059201.1Genomic Context describing neighboring genes Neighboring gene bcl-2-like protein 1 Neighboring gene endothelial transcription factor GATA-2 Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene red-sensitive opsin-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059201.1 Reference ASM2061545v1 Primary Assembly

    Range
    31415571..31429829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041887769.2 → XP_041743703.2  host cell factor 1-like isoform X6

  2. XM_041887767.2 → XP_041743701.2  host cell factor 1-like isoform X4

  3. XM_041887765.2 → XP_041743699.2  host cell factor 1-like isoform X2

    Related
    ENSCCFP00005055961.1, ENSCCFT00005061283.1

  4. XM_041887768.2 → XP_041743702.2  host cell factor 1-like isoform X5

    Related
    ENSCCFP00005055992.1, ENSCCFT00005061314.1

  5. XM_041887766.2 → XP_041743700.2  host cell factor 1-like isoform X3

  6. XM_041887763.2 → XP_041743697.2  host cell factor 1-like isoform X1

  7. XM_041887764.2 → XP_041743698.2  host cell factor 1-like isoform X1

Nucleotide Protein
Heading Accession and Version

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