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LOC121568045 kin of IRRE-like protein 3 [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121568045, updated on 28-May-2024

Summary

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Gene symbol
LOC121568045
Gene description
kin of IRRE-like protein 3
See related
EnsemblRapid:ENSCCFG00005044544
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121568045 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 6 NC_059197.1 (24860687..25063002, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 6 NC_055072.1 (52239833..52440780, complement)

Chromosome 6 - NC_059197.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 7-like Neighboring gene homeobox protein BarH-like 2 Neighboring gene somatolactin-like Neighboring gene olfactory receptor 11A1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059197.1 Reference ASM2061545v1 Primary Assembly

    Range
    24860687..25063002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041878609.2 → XP_041734543.1  kin of IRRE-like protein 3 isoform X4

    Related
    ENSCCFP00005103250.1, ENSCCFT00005111357.1
    Conserved Domains (3) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cd05758
    Location:388 → 485
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:133 → 203
    Ig; Immunoglobulin domain

  2. XM_041878608.2 → XP_041734542.1  kin of IRRE-like protein 3 isoform X3

    Conserved Domains (3) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cd05758
    Location:388 → 485
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:133 → 203
    Ig; Immunoglobulin domain

  3. XM_041878607.2 → XP_041734541.1  kin of IRRE-like protein 3 isoform X2

    Conserved Domains (3) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cd05758
    Location:388 → 485
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:133 → 203
    Ig; Immunoglobulin domain

  4. XM_041878606.2 → XP_041734540.1  kin of IRRE-like protein 3 isoform X1

    Conserved Domains (3) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cd05758
    Location:388 → 485
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:133 → 203
    Ig; Immunoglobulin domain
Nucleotide Protein
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