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LOC121560968 high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121560968, updated on 28-May-2024

Summary

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Gene symbol
LOC121560968
Gene description
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
See related
EnsemblRapid:ENSCCFG00005000819
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121560968 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 5 NC_059196.1 (8936295..8952725)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 5 NC_055071.1 (12125550..12142062, complement)

Chromosome 5 - NC_059196.1Genomic Context describing neighboring genes Neighboring gene neurogranin Neighboring gene hepatocyte cell adhesion molecule Neighboring gene out at first protein homolog Neighboring gene TLC domain-containing protein 5 Neighboring gene TLC domain-containing protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059196.1 Reference ASM2061545v1 Primary Assembly

    Range
    8936295..8952725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041873721.2 → XP_041729655.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    Related
    ENSCCFP00005004366.1, ENSCCFT00005004513.1
    Conserved Domains (1) summary
    pfam00233
    Location:253 → 483
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  2. XM_041873728.2 → XP_041729662.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X2

    Related
    ENSCCFP00005004364.1, ENSCCFT00005004511.1
    Conserved Domains (1) summary
    cd00077
    Location:254 → 427
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  3. XM_041873735.2 → XP_041729669.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X3

    Related
    ENSCCFP00005004352.1, ENSCCFT00005004496.1
    Conserved Domains (1) summary
    cd00077
    Location:254 → 427
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
Nucleotide Protein
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