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dysf dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121558820, updated on 28-May-2024

Summary

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Gene symbol
dysf
Gene description
dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)
See related
EnsemblRapid:ENSCCFG00005015316
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
Orthologs
human zebrafish all
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Genomic context

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See dysf in Genome Data Viewer
Location:
chromosome: 39
Exon count:
61
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 39 NC_059230.1 (4620044..4765431, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) Unplaced Scaffold NW_024574448.1 (314989..397479)

Chromosome 39 - NC_059230.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123482879 Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 638 Neighboring gene short transient receptor potential channel 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059230.1 Reference ASM2061545v1 Primary Assembly

    Range
    4620044..4765431 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045211867.1 → XP_045067802.1  dysferlin isoform X5

    Related
    ENSCCFP00005078308.1, ENSCCFT00005084336.1

  2. XM_045211866.1 → XP_045067801.1  dysferlin isoform X4

  3. XM_045211865.1 → XP_045067800.1  dysferlin isoform X3

  4. XM_045211864.1 → XP_045067799.1  dysferlin isoform X2

  5. XM_045211863.1 → XP_045067798.1  dysferlin isoform X1

  6. XM_045211869.1 → XP_045067804.1  dysferlin isoform X7

    Related
    ENSCCFP00005078311.1, ENSCCFT00005084339.1

  7. XM_045211868.1 → XP_045067803.1  dysferlin isoform X6

    Related
    ENSCCFP00005078309.1, ENSCCFT00005084337.1

  8. XM_045211870.1 → XP_045067805.1  dysferlin isoform X8

RNA

  1. XR_006657956.1 RNA Sequence

    Related
    ENSCCFT00005079896.1
Nucleotide Protein
Heading Accession and Version

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