U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC121558677 gamma-sarcoglycan [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121558677, updated on 28-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC121558677
Gene description
gamma-sarcoglycan
See related
EnsemblRapid:ENSCCFG00005031691
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC121558677 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 5 NC_059196.1 (4072084..4087200)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 5 NC_055071.1 (4810903..4826008)

Chromosome 5 - NC_059196.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 4 Neighboring gene 40S ribosomal protein S25 Neighboring gene sacsin-like Neighboring gene tumor necrosis factor receptor superfamily member 19-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059196.1 Reference ASM2061545v1 Primary Assembly

    Range
    4072084..4087200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041872079.2 → XP_041728013.1  gamma-sarcoglycan

    Related
    ENSCCFP00005069784.1, ENSCCFT00005075443.1

  2. XM_041872090.2 → XP_041728024.1  gamma-sarcoglycan

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.