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LOC121553928 plectin-like [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121553928, updated on 30-Nov-2023

Summary

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Gene symbol
LOC121553928
Gene description
plectin-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
Also known as
eppk1
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Genomic context

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See LOC121553928 in Genome Data Viewer
Location:
chromosome: 38
Exon count:
36
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 38 NC_059229.1 (2845173..2976568, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 38 NC_055104.1 (10147870..10246964)

Chromosome 38 - NC_059229.1Genomic Context describing neighboring genes Neighboring gene nuclear factor of activated T-cells, cytoplasmic 1-like Neighboring gene solute carrier family 52, riboflavin transporter, member 2-like Neighboring gene uncharacterized LOC121553930 Neighboring gene DNA translocase FtsK 1-like Neighboring gene oxidation resistance protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: plectin-like
Names
epiplakin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059229.1 Reference ASM2061545v1 Primary Assembly

    Range
    2845173..2976568 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045211666.1 → XP_045067601.1  LOW QUALITY PROTEIN: plectin-like

Nucleotide Protein
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Gene LinkOut

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