U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC121552877 high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121552877, updated on 28-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC121552877
Gene description
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
See related
EnsemblRapid:ENSCCFG00005002238
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC121552877 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
21
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 4 NC_059195.1 (13795918..13829518, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 4 NC_055070.1 (29673321..29706875)

Chromosome 4 - NC_059195.1Genomic Context describing neighboring genes Neighboring gene calphotin Neighboring gene calphotin Neighboring gene glucose-6-phosphate exchanger SLC37A1 Neighboring gene uncharacterized LOC121552858

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059195.1 Reference ASM2061545v1 Primary Assembly

    Range
    13795918..13829518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041865983.2 → XP_041721917.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X2

    Conserved Domains (1) summary
    cd00077
    Location:243 → 416
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  2. XM_041866007.2 → XP_041721941.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X5

    Conserved Domains (1) summary
    cd00077
    Location:243 → 416
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  3. XM_041865977.2 → XP_041721911.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X2

    Related
    ENSCCFP00005004812.1, ENSCCFT00005004967.1
    Conserved Domains (1) summary
    cd00077
    Location:243 → 416
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  4. XM_041865998.2 → XP_041721932.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X4

    Conserved Domains (1) summary
    cd00077
    Location:243 → 416
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  5. XM_041865968.2 → XP_041721902.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    Related
    ENSCCFP00005004831.1, ENSCCFT00005004986.1
    Conserved Domains (1) summary
    cd00077
    Location:243 → 416
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  6. XM_041865990.2 → XP_041721924.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X3

    Related
    ENSCCFP00005004756.1, ENSCCFT00005004911.1
    Conserved Domains (1) summary
    cd00077
    Location:243 → 416
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases