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sgca sarcoglycan, alpha [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121547585, updated on 28-May-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
EnsemblRapid:ENSCCFG00005012296
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 31
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 31 NC_059222.1 (13721224..13731845)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 31 NC_055097.1 (32817457..32828065)

Chromosome 31 - NC_059222.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase PRDM9 Neighboring gene neurabin-2 Neighboring gene collagen, type I, alpha 1b Neighboring gene inactive all-trans-retinol 13,14-reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059222.1 Reference ASM2061545v1 Primary Assembly

    Range
    13721224..13731845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041858928.1 → XP_041714862.1  alpha-sarcoglycan isoform X1

    Related
    ENSCCFP00005027085.1, ENSCCFT00005029001.1
    Conserved Domains (1) summary
    pfam05510
    Location:10 → 350
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_041858930.1 → XP_041714864.1  alpha-sarcoglycan isoform X3

    Related
    ENSCCFP00005027084.1, ENSCCFT00005029000.1
    Conserved Domains (1) summary
    pfam05510
    Location:10 → 350
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_041858929.1 → XP_041714863.1  alpha-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam05510
    Location:10 → 349
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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