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LOC121546176 host cell factor 1 [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121546176, updated on 28-May-2024

Summary

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Gene symbol
LOC121546176
Gene description
host cell factor 1
See related
EnsemblRapid:ENSCCFG00005037892
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121546176 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
32
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 30 NC_059221.1 (41973220..42041932, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 30 NC_055096.1 (48640146..48708378, complement)

Chromosome 30 - NC_059221.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121546175 Neighboring gene GATA-binding factor 2 Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene nucleolar and coiled-body phosphoprotein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059221.1 Reference ASM2061545v1 Primary Assembly

    Range
    41973220..42041932 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045209573.1 → XP_045065508.1  host cell factor 1 isoform X1

    Related
    ENSCCFP00005086935.1, ENSCCFT00005093499.1

  2. XM_045209576.1 → XP_045065511.1  host cell factor 1 isoform X4

  3. XM_045209574.1 → XP_045065509.1  host cell factor 1 isoform X2

  4. XM_045209575.1 → XP_045065510.1  host cell factor 1 isoform X3

    Related
    ENSCCFP00005086828.1, ENSCCFT00005093392.1

  5. XM_041857243.2 → XP_041713177.2  host cell factor 1 isoform X1

  6. XM_045209577.1 → XP_045065512.1  host cell factor 1 isoform X5

Nucleotide Protein
Heading Accession and Version

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