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LOC121540869 plectin-like [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121540869, updated on 28-May-2024

Summary

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Gene symbol
LOC121540869
Gene description
plectin-like
See related
EnsemblRapid:ENSCCFG00005049398
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121540869 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
34
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 26 NC_059217.1 (49345367..49428495)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 26 NC_055092.1 (55637708..55644011)

Chromosome 26 - NC_059217.1Genomic Context describing neighboring genes Neighboring gene probable non-functional immunoglobulin kappa variable 6D-41 Neighboring gene uncharacterized LOC121540873 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene nuclear factor 7, brain Neighboring gene riboflavin transporter 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059217.1 Reference ASM2061545v1 Primary Assembly

    Range
    49345367..49428495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045207909.1 → XP_045063844.1  LOW QUALITY PROTEIN: plectin-like

    Related
    ENSCCFT00005125512.1
Nucleotide Protein
Heading Accession and Version

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