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LOC121534134 torsin-1A-interacting protein 2-like [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121534134, updated on 28-May-2024

Summary

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Gene symbol
LOC121534134
Gene description
torsin-1A-interacting protein 2-like
See related
EnsemblRapid:ENSCCFG00005041693
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121534134 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 20 NC_059211.1 (23007103..23019100, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 20 NC_055086.1 (67133006..67145009, complement)

Chromosome 20 - NC_059211.1Genomic Context describing neighboring genes Neighboring gene surface protein Neighboring gene unconventional SNARE in the ER 1 homolog (S. cerevisiae) Neighboring gene torsin-1A-interacting protein 2 Neighboring gene olfactomedin-like 2Ba

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059211.1 Reference ASM2061545v1 Primary Assembly

    Range
    23007103..23019100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045205409.1 → XP_045061344.1  torsin-1A-interacting protein 2-like isoform X3

  2. XM_045205408.1 → XP_045061343.1  torsin-1A-interacting protein 2-like isoform X2

    Related
    ENSCCFP00005096259.1, ENSCCFT00005103514.1

  3. XM_045205410.1 → XP_045061345.1  torsin-1A-interacting protein 2-like isoform X4

  4. XM_045205407.1 → XP_045061342.1  torsin-1A-interacting protein 2-like isoform X1

    Related
    ENSCCFP00005096258.1, ENSCCFT00005103513.1
Nucleotide Protein
Heading Accession and Version

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