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b4galnt4a beta-1,4-N-acetyl-galactosaminyl transferase 4a [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121531187, updated on 28-May-2024

Summary

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Gene symbol
b4galnt4a
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 4a
See related
EnsemblRapid:ENSCCFG00005027472
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
Orthologs
zebrafish all
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Genomic context

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See b4galnt4a in Genome Data Viewer
Location:
chromosome: 19
Exon count:
21
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 19 NC_059210.1 (16749281..17226154, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 19 NC_055085.1 (35559459..36074897, complement)

Chromosome 19 - NC_059210.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121531991 Neighboring gene BR serine/threonine kinase 2a Neighboring gene ankyrin repeat and BTB (POZ) domain containing 2b Neighboring gene uncharacterized LOC121531994 Neighboring gene leucine-rich repeat-containing protein 15-like Neighboring gene transmembrane protein 86A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059210.1 Reference ASM2061545v1 Primary Assembly

    Range
    16749281..17226154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045227106.1 → XP_045083041.1  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

    Related
    ENSCCFP00005058519.1, ENSCCFT00005063883.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases