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LOC121530673 secreted frizzled-related protein 1 [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121530673, updated on 28-May-2024

Summary

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Gene symbol
LOC121530673
Gene description
secreted frizzled-related protein 1
See related
EnsemblRapid:ENSCCFG00005008648
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121530673 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 18 NC_059209.1 (29275725..29305026, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 18 NC_055084.1 (14018205..14047480, complement)

Chromosome 18 - NC_059209.1Genomic Context describing neighboring genes Neighboring gene transcriptional and immune response regulator-like Neighboring gene zinc finger matrin-type protein 4 Neighboring gene golgin subfamily A member 7 Neighboring gene lysyl oxidase homolog 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059209.1 Reference ASM2061545v1 Primary Assembly

    Range
    29275725..29305026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041835813.2 → XP_041691747.1  secreted frizzled-related protein 1 isoform X2

    Related
    ENSCCFP00005018813.1, ENSCCFT00005019992.1
    Conserved Domains (2) summary
    cl02447
    Location:46 → 169
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
    cl02512
    Location:176 → 275
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  2. XM_041835812.2 → XP_041691746.1  secreted frizzled-related protein 1 isoform X1

    Related
    ENSCCFP00005018812.1, ENSCCFT00005019991.1
    Conserved Domains (2) summary
    cd03580
    Location:178 → 302
    NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
    cl02447
    Location:46 → 169
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
Nucleotide Protein
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