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LOC121530630 polypeptide N-acetylgalactosaminyltransferase 9 [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121530630, updated on 28-May-2024

Summary

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Gene symbol
LOC121530630
Gene description
polypeptide N-acetylgalactosaminyltransferase 9
See related
EnsemblRapid:ENSCCFG00005051710
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121530630 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 18 NC_059209.1 (25405853..25522782, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 18 NC_055084.1 (10163073..10279959, complement)

Chromosome 18 - NC_059209.1Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine receptor 7-like Neighboring gene ATPase family AAA domain containing 1a Neighboring gene autism susceptibility gene 2 protein-like Neighboring gene nuclear factor 7, ovary-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059209.1 Reference ASM2061545v1 Primary Assembly

    Range
    25405853..25522782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041835740.2 → XP_041691674.1  polypeptide N-acetylgalactosaminyltransferase 9

    Related
    ENSCCFP00005118383.1, ENSCCFT00005128998.1
    Conserved Domains (2) summary
    cd02510
    Location:156 → 455
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:468 → 596
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
Heading Accession and Version

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