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kirrel3b kirre like nephrin family adhesion molecule 3b [ Cheilinus undulatus (humphead wrasse) ]

Gene ID: 121524483, updated on 22-Mar-2024

Summary

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Gene symbol
kirrel3b
Gene description
kirre like nephrin family adhesion molecule 3b
See related
EnsemblRapid:ENSCUDG00000001238
Gene type
protein coding
RefSeq status
MODEL
Organism
Cheilinus undulatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Cheilinus
Orthologs
zebrafish all
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Genomic context

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See kirrel3b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly LG Location
100 current ASM1832078v1 (GCF_018320785.1) 2 NC_054866.1 (56271655..56593792)

Linkage Group 2 - NC_054866.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 11A1-like Neighboring gene somatolactin alpha Neighboring gene BARX homeobox 2 Neighboring gene RNA binding motif protein 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054866.1 Chromosome 2 Reference ASM1832078v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cheilinus undulatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1832078v1 Primary Assembly

Genomic

  1. NC_054866.1 Reference ASM1832078v1 Primary Assembly

    Range
    56271655..56593792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041809908.1 → XP_041665842.1  kin of IRRE-like protein 3

    Related
    ENSCUDP00000002482.1, ENSCUDT00000002625.1
    Conserved Domains (3) summary
    smart00408
    Location:134 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:312 → 387
    IG; Immunoglobulin
    cd05758
    Location:389 → 486
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases