U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pleca plectin a [ Cheilinus undulatus (humphead wrasse) ]

Gene ID: 121524134, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
pleca
Gene description
plectin a
See related
EnsemblRapid:ENSCUDG00000002599
Gene type
protein coding
RefSeq status
MODEL
Organism
Cheilinus undulatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Cheilinus
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See pleca in Genome Data Viewer
Location:
chromosome: 16
Exon count:
42
Annotation release Status Assembly LG Location
100 current ASM1832078v1 (GCF_018320785.1) 16 NC_054880.1 (12795783..12933057)

Linkage Group 16 - NC_054880.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 74 Neighboring gene eukaryotic translation initiation factor 3, subunit E, b Neighboring gene doublesex- and mab-3-related transcription factor 1-like Neighboring gene epiplakin 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_054880.1 Chromosome 16 Reference ASM1832078v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
plectin a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cheilinus undulatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1832078v1 Primary Assembly

Genomic

  1. NC_054880.1 Reference ASM1832078v1 Primary Assembly

    Range
    12795783..12933057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041809360.1 → XP_041665294.1  plectin a isoform X1

    Conserved Domains (7) summary
    PTZ00121
    Location:1835 → 2627
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:568 → 661
    SPEC; Spectrin repeats
    smart00250
    Location:4360 → 4397
    PLEC; Plectin repeat
    COG0419
    Location:1375 → 2028
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:70 → 297
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2544 → 2713
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:663 → 853
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  2. XM_041809362.1 → XP_041665296.1  plectin a isoform X3

    Conserved Domains (8) summary
    PTZ00121
    Location:1828 → 2620
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:568 → 661
    SPEC; Spectrin repeats
    smart00250
    Location:4353 → 4390
    PLEC; Plectin repeat
    COG0419
    Location:1368 → 2021
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:70 → 297
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2537 → 2706
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:663 → 853
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam02463
    Location:964 → 1760
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_041809361.1 → XP_041665295.1  plectin a isoform X2

    Conserved Domains (7) summary
    PTZ00121
    Location:1830 → 2622
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:563 → 656
    SPEC; Spectrin repeats
    smart00250
    Location:4355 → 4392
    PLEC; Plectin repeat
    COG0419
    Location:1370 → 2023
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:70 → 292
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2539 → 2708
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:658 → 848
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  4. XM_041809363.1 → XP_041665297.1  plectin a isoform X4

    Conserved Domains (8) summary
    PTZ00121
    Location:1823 → 2615
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:563 → 656
    SPEC; Spectrin repeats
    smart00250
    Location:4348 → 4385
    PLEC; Plectin repeat
    COG0419
    Location:1363 → 2016
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:70 → 292
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2532 → 2701
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:658 → 848
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam02463
    Location:959 → 1755
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_041809370.1 → XP_041665304.1  plectin a isoform X10

    Related
    ENSCUDP00000014644.1, ENSCUDT00000014934.1
    Conserved Domains (7) summary
    PTZ00121
    Location:1795 → 2587
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:528 → 621
    SPEC; Spectrin repeats
    smart00250
    Location:4320 → 4357
    PLEC; Plectin repeat
    COG0419
    Location:1335 → 1988
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:35 → 257
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2504 → 2673
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:623 → 813
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  6. XM_041809372.1 → XP_041665306.1  plectin a isoform X12

    Related
    ENSCUDP00000014645.1, ENSCUDT00000014935.1
    Conserved Domains (7) summary
    PTZ00121
    Location:1790 → 2582
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:523 → 616
    SPEC; Spectrin repeats
    smart00250
    Location:4315 → 4352
    PLEC; Plectin repeat
    COG0419
    Location:1330 → 1983
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:35 → 252
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2499 → 2668
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:618 → 808
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  7. XM_041809374.1 → XP_041665308.1  plectin a isoform X14

    Conserved Domains (7) summary
    PTZ00121
    Location:1780 → 2572
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:513 → 606
    SPEC; Spectrin repeats
    smart00250
    Location:4305 → 4342
    PLEC; Plectin repeat
    COG0419
    Location:1320 → 1973
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:20 → 242
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2489 → 2658
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:608 → 798
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  8. XM_041809376.1 → XP_041665310.1  plectin a isoform X16

    Related
    ENSCUDP00000014632.1, ENSCUDT00000014922.1
    Conserved Domains (7) summary
    PTZ00121
    Location:1775 → 2567
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:508 → 601
    SPEC; Spectrin repeats
    smart00250
    Location:4300 → 4337
    PLEC; Plectin repeat
    COG0419
    Location:1315 → 1968
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:20 → 237
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2484 → 2653
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:603 → 793
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  9. XM_041809375.1 → XP_041665309.1  plectin a isoform X15

    Conserved Domains (7) summary
    PTZ00121
    Location:1778 → 2570
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:511 → 604
    SPEC; Spectrin repeats
    smart00250
    Location:4303 → 4340
    PLEC; Plectin repeat
    COG0419
    Location:1318 → 1971
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:18 → 240
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2487 → 2656
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:606 → 796
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  10. XM_041809377.1 → XP_041665311.1  plectin a isoform X17

    Related
    ENSCUDP00000014364.1, ENSCUDT00000014645.1
    Conserved Domains (7) summary
    PTZ00121
    Location:1773 → 2565
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:506 → 599
    SPEC; Spectrin repeats
    smart00250
    Location:4298 → 4335
    PLEC; Plectin repeat
    COG0419
    Location:1313 → 1966
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:18 → 235
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2482 → 2651
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:601 → 791
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  11. XM_041809367.1 → XP_041665301.1  plectin a isoform X8

    Conserved Domains (7) summary
    PTZ00121
    Location:1799 → 2591
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:532 → 625
    SPEC; Spectrin repeats
    smart00250
    Location:4324 → 4361
    PLEC; Plectin repeat
    COG0419
    Location:1339 → 1992
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:39 → 261
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2508 → 2677
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:627 → 817
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  12. XM_041809371.1 → XP_041665305.1  plectin a isoform X11

    Related
    ENSCUDP00000014361.1, ENSCUDT00000014642.1
    Conserved Domains (7) summary
    PTZ00121
    Location:1794 → 2586
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:527 → 620
    SPEC; Spectrin repeats
    smart00250
    Location:4319 → 4356
    PLEC; Plectin repeat
    COG0419
    Location:1334 → 1987
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:39 → 256
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2503 → 2672
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:622 → 812
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  13. XM_041809364.1 → XP_041665298.1  plectin a isoform X5

    Conserved Domains (7) summary
    PTZ00121
    Location:1815 → 2607
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:548 → 641
    SPEC; Spectrin repeats
    smart00250
    Location:4340 → 4377
    PLEC; Plectin repeat
    COG0419
    Location:1355 → 2008
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:50 → 277
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2524 → 2693
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:643 → 833
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  14. XM_041809365.1 → XP_041665299.1  plectin a isoform X6

    Related
    ENSCUDP00000014343.1, ENSCUDT00000014623.1
    Conserved Domains (7) summary
    PTZ00121
    Location:1810 → 2602
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:543 → 636
    SPEC; Spectrin repeats
    smart00250
    Location:4335 → 4372
    PLEC; Plectin repeat
    COG0419
    Location:1350 → 2003
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:50 → 272
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2519 → 2688
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:638 → 828
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  15. XM_041809366.1 → XP_041665300.1  plectin a isoform X7

    Conserved Domains (7) summary
    PTZ00121
    Location:1801 → 2593
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:534 → 627
    SPEC; Spectrin repeats
    smart00250
    Location:4326 → 4363
    PLEC; Plectin repeat
    COG0419
    Location:1341 → 1994
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:41 → 263
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2510 → 2679
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:629 → 819
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  16. XM_041809369.1 → XP_041665303.1  plectin a isoform X9

    Related
    ENSCUDP00000014161.1, ENSCUDT00000014441.1
    Conserved Domains (7) summary
    PTZ00121
    Location:1796 → 2588
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:529 → 622
    SPEC; Spectrin repeats
    smart00250
    Location:4321 → 4358
    PLEC; Plectin repeat
    COG0419
    Location:1336 → 1989
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:41 → 258
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2505 → 2674
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:624 → 814
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  17. XM_041809373.1 → XP_041665307.1  plectin a isoform X13

    Related
    ENSCUDP00000014619.1, ENSCUDT00000014909.1
    Conserved Domains (8) summary
    PTZ00121
    Location:1789 → 2581
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:529 → 622
    SPEC; Spectrin repeats
    smart00250
    Location:4314 → 4351
    PLEC; Plectin repeat
    COG0419
    Location:1329 → 1982
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:41 → 258
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2498 → 2667
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:624 → 814
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam02463
    Location:925 → 1721
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases