U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

asph aspartate beta-hydroxylase [ Cheilinus undulatus (humphead wrasse) ]

Gene ID: 121519823, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
asph
Gene description
aspartate beta-hydroxylase
See related
EnsemblRapid:ENSCUDG00000018167
Gene type
protein coding
RefSeq status
MODEL
Organism
Cheilinus undulatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Cheilinus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See asph in Genome Data Viewer
Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly LG Location
100 current ASM1832078v1 (GCF_018320785.1) 13 NC_054877.1 (1384412..1458495)

Linkage Group 13 - NC_054877.1Genomic Context describing neighboring genes Neighboring gene xenotropic and polytropic retrovirus receptor 1 homolog Neighboring gene tocopherol (alpha) transfer protein Neighboring gene 2-lysophosphatidate phosphatase PLPPR4-like Neighboring gene kinesin-associated protein 3-like Neighboring gene tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_054877.1 Chromosome 13 Reference ASM1832078v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cheilinus undulatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1832078v1 Primary Assembly

Genomic

  1. NC_054877.1 Reference ASM1832078v1 Primary Assembly

    Range
    1384412..1458495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041802827.1 → XP_041658761.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Related
    ENSCUDP00000045909.1, ENSCUDT00000046545.1
    Conserved Domains (1) summary
    pfam05279
    Location:39 → 127
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  2. XM_041802829.1 → XP_041658763.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (1) summary
    pfam05279
    Location:33 → 121
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  3. XM_041802826.1 → XP_041658760.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Conserved Domains (1) summary
    pfam05279
    Location:53 → 141
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  4. XM_041802828.1 → XP_041658762.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (1) summary
    pfam05279
    Location:53 → 126
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  5. XM_041802830.1 → XP_041658764.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (1) summary
    pfam05279
    Location:53 → 84
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.