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CHKA choline kinase alpha [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121501495, updated on 22-Mar-2024

Summary

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Gene symbol
CHKA
Gene description
choline kinase alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See CHKA in Genome Data Viewer
Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 11 NC_054834.1 (73336149..73403145)

Chromosome 11 - NC_054834.1Genomic Context describing neighboring genes Neighboring gene lysine methyltransferase 5B Neighboring gene repressor of RNA polymerase III transcription MAF1 homolog Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like Neighboring gene T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 Neighboring gene NADH:ubiquinone oxidoreductase core subunit S8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054834.1 Chromosome 11 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline kinase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054834.1 Reference ASM1834538v1 Primary Assembly

    Range
    73336149..73403145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041773555.1 → XP_041629489.1  choline kinase alpha isoform X4

    Conserved Domains (1) summary
    cd05156
    Location:109 → 460
    ChoK_euk; Euykaryotic Choline Kinase

  2. XM_041773551.1 → XP_041629485.1  choline kinase alpha isoform X1

    Conserved Domains (1) summary
    cd05156
    Location:109 → 450
    ChoK_euk; Euykaryotic Choline Kinase

  3. XM_041773552.1 → XP_041629486.1  choline kinase alpha isoform X2

    Conserved Domains (1) summary
    cd05156
    Location:109 → 432
    ChoK_euk; Euykaryotic Choline Kinase

  4. XM_041773553.1 → XP_041629487.1  choline kinase alpha isoform X3

    Conserved Domains (1) summary
    cd05156
    Location:1 → 330
    ChoK_euk; Euykaryotic Choline Kinase

  5. XM_041773554.1 → XP_041629488.1  choline kinase alpha isoform X3

    Conserved Domains (1) summary
    cd05156
    Location:1 → 330
    ChoK_euk; Euykaryotic Choline Kinase
Nucleotide Protein Strain
Heading Accession and Version

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