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NCAM1 neural cell adhesion molecule 1 [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121500158, updated on 22-Mar-2024

Summary

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Gene symbol
NCAM1
Gene description
neural cell adhesion molecule 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See NCAM1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
27
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 10 NC_054833.1 (46163280..46462344, complement)

Chromosome 10 - NC_054833.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and kinase domain containing 1 Neighboring gene tetratricopeptide repeat domain 12 Neighboring gene 40S ribosomal protein S2-like Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054833.1 Chromosome 10 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054833.1 Reference ASM1834538v1 Primary Assembly

    Range
    46163280..46462344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041771641.1 → XP_041627575.1  neural cell adhesion molecule 1 isoform X3

    Conserved Domains (6) summary
    cd05869
    Location:305 → 411
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    PHA03247
    Location:832 → 1126
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:231 → 235
    Ig; Ig strand B [structural motif]
    cl11960
    Location:211 → 306
    Ig; Immunoglobulin domain

  2. XM_041771648.1 → XP_041627582.1  neural cell adhesion molecule 1 isoform X10

    Conserved Domains (7) summary
    cd05869
    Location:312 → 408
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:131 → 215
    IG; Immunoglobulin
    smart00410
    Location:33 → 119
    IG_like; Immunoglobulin like
    PHA03247
    Location:792 → 1086
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:504 → 601
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]
    cl11960
    Location:218 → 313
    Ig; Immunoglobulin domain

  3. XM_041771642.1 → XP_041627576.1  neural cell adhesion molecule 1 isoform X4

    Conserved Domains (7) summary
    cd05869
    Location:312 → 408
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    smart00410
    Location:417 → 495
    IG_like; Immunoglobulin like
    PHA03247
    Location:829 → 1123
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:504 → 601
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]
    cl11960
    Location:218 → 313
    Ig; Immunoglobulin domain

  4. XM_041771647.1 → XP_041627581.1  neural cell adhesion molecule 1 isoform X9

    Conserved Domains (7) summary
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    smart00410
    Location:131 → 215
    IG_like; Immunoglobulin like
    PHA03247
    Location:803 → 1097
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]
    cl11960
    Location:218 → 313
    Ig; Immunoglobulin domain

  5. XM_041771646.1 → XP_041627580.1  neural cell adhesion molecule 1 isoform X8

    Conserved Domains (6) summary
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    PHA03247
    Location:804 → 1098
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]
    cl11960
    Location:218 → 313
    Ig; Immunoglobulin domain

  6. XM_041771645.1 → XP_041627579.1  neural cell adhesion molecule 1 isoform X7

    Conserved Domains (6) summary
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    PHA03247
    Location:809 → 1103
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]
    cl11960
    Location:218 → 313
    Ig; Immunoglobulin domain

  7. XM_041771644.1 → XP_041627578.1  neural cell adhesion molecule 1 isoform X6

    Conserved Domains (7) summary
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    smart00410
    Location:131 → 215
    IG_like; Immunoglobulin like
    PHA03247
    Location:824 → 1118
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]
    cl11960
    Location:218 → 313
    Ig; Immunoglobulin domain

  8. XM_041771643.1 → XP_041627577.1  neural cell adhesion molecule 1 isoform X5

    Conserved Domains (7) summary
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    smart00410
    Location:131 → 215
    IG_like; Immunoglobulin like
    PHA03247
    Location:825 → 1119
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]
    cl11960
    Location:218 → 313
    Ig; Immunoglobulin domain

  9. XM_041771640.1 → XP_041627574.1  neural cell adhesion molecule 1 isoform X2

    Conserved Domains (7) summary
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    smart00410
    Location:131 → 215
    IG_like; Immunoglobulin like
    PHA03247
    Location:838 → 1132
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]
    cl11960
    Location:218 → 313
    Ig; Immunoglobulin domain

  10. XM_041771639.1 → XP_041627573.1  neural cell adhesion molecule 1 isoform X1

    Conserved Domains (7) summary
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    smart00410
    Location:131 → 215
    IG_like; Immunoglobulin like
    PHA03247
    Location:839 → 1133
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]
    cl11960
    Location:218 → 313
    Ig; Immunoglobulin domain

  11. XM_041771649.1 → XP_041627583.1  neural cell adhesion molecule 1 isoform X11

    Conserved Domains (6) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:434 → 502
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:438 → 442
    Ig; Ig strand B [structural motif]

  12. XM_041771650.1 → XP_041627584.1  neural cell adhesion molecule 1 isoform X12

    Conserved Domains (6) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:434 → 502
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:438 → 442
    Ig; Ig strand B [structural motif]

  13. XM_041771652.1 → XP_041627586.1  neural cell adhesion molecule 1 isoform X14

    Conserved Domains (6) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 408
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:424 → 492
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    cd00063
    Location:504 → 601
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:428 → 432
    Ig; Ig strand B [structural motif]

  14. XM_041771651.1 → XP_041627585.1  neural cell adhesion molecule 1 isoform X13

    Conserved Domains (6) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:434 → 502
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:438 → 442
    Ig; Ig strand B [structural motif]

  15. XM_041771653.1 → XP_041627587.1  neural cell adhesion molecule 1 isoform X15

    Conserved Domains (6) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 408
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:424 → 492
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    cd00063
    Location:504 → 601
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:428 → 432
    Ig; Ig strand B [structural motif]

  16. XM_041771655.1 → XP_041627589.1  neural cell adhesion molecule 1 isoform X17

    Conserved Domains (7) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:434 → 502
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    smart00410
    Location:131 → 215
    IG_like; Immunoglobulin like
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:438 → 442
    Ig; Ig strand B [structural motif]

  17. XM_041771654.1 → XP_041627588.1  neural cell adhesion molecule 1 isoform X16

    Conserved Domains (7) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:434 → 502
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    smart00410
    Location:131 → 215
    IG_like; Immunoglobulin like
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:438 → 442
    Ig; Ig strand B [structural motif]

  18. XM_041771659.1 → XP_041627593.1  neural cell adhesion molecule 1 isoform X21

    Conserved Domains (6) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 408
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:424 → 492
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    cd00063
    Location:504 → 601
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:428 → 432
    Ig; Ig strand B [structural motif]

  19. XM_041771657.1 → XP_041627591.1  neural cell adhesion molecule 1 isoform X19

    Conserved Domains (6) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 408
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:424 → 492
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    cd00063
    Location:504 → 601
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:428 → 432
    Ig; Ig strand B [structural motif]

  20. XM_041771656.1 → XP_041627590.1  neural cell adhesion molecule 1 isoform X18

    Conserved Domains (7) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 418
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:434 → 502
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:131 → 215
    IG; Immunoglobulin
    smart00410
    Location:33 → 119
    IG_like; Immunoglobulin like
    cd00063
    Location:514 → 611
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:44 → 48
    Ig; Ig strand B [structural motif]

  21. XM_041771658.1 → XP_041627592.1  neural cell adhesion molecule 1 isoform X20

    Conserved Domains (6) summary
    cd05730
    Location:218 → 313
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:312 → 408
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00408
    Location:424 → 492
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:33 → 119
    IG; Immunoglobulin
    cd00063
    Location:504 → 601
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:428 → 432
    Ig; Ig strand B [structural motif]
Nucleotide Protein Strain
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