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LOC121499666 carbohydrate sulfotransferase 6 [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121499666, updated on 16-Nov-2023

Summary

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Gene symbol
LOC121499666
Gene description
carbohydrate sulfotransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
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Genomic context

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See LOC121499666 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 10 NC_054833.1 (101819082..101844356)

Chromosome 10 - NC_054833.1Genomic Context describing neighboring genes Neighboring gene adenosine deaminase tRNA specific 1 Neighboring gene U6 spliceosomal RNA Neighboring gene GABA type A receptor associated protein like 2 Neighboring gene transmembrane protein 231 Neighboring gene endogenous retrovirus group K member 13-1 Env polyprotein Neighboring gene transmembrane protein 170A Neighboring gene craniofacial development protein 1 Neighboring gene BCAR1 scaffold protein, Cas family member

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054833.1 Chromosome 10 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054833.1 Reference ASM1834538v1 Primary Assembly

    Range
    101819082..101844356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041770584.1 → XP_041626518.1  carbohydrate sulfotransferase 6

  2. XM_041770578.1 → XP_041626512.1  carbohydrate sulfotransferase 6

  3. XM_041770581.1 → XP_041626515.1  carbohydrate sulfotransferase 6

  4. XM_041770577.1 → XP_041626511.1  carbohydrate sulfotransferase 6

  5. XM_041770579.1 → XP_041626513.1  carbohydrate sulfotransferase 6

  6. XM_041770582.1 → XP_041626516.1  carbohydrate sulfotransferase 6

  7. XM_041770583.1 → XP_041626517.1  carbohydrate sulfotransferase 6

Nucleotide Protein Strain
Heading Accession and Version

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