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ASPH aspartate beta-hydroxylase [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121499037, updated on 22-Mar-2024

Summary

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Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See ASPH in Genome Data Viewer
Location:
chromosome: 9
Exon count:
28
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 9 NC_054832.1 (68304700..68516137)

Chromosome 9 - NC_054832.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein-associated protein B-like Neighboring gene MICOS complex subunit MIC26-like Neighboring gene clavesin 1 Neighboring gene SRA stem-loop-interacting RNA-binding protein, mitochondrial-like Neighboring gene uncharacterized LOC121498447

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054832.1 Chromosome 9 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054832.1 Reference ASM1834538v1 Primary Assembly

    Range
    68304700..68516137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041769500.1 → XP_041625434.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Conserved Domains (5) summary
    TIGR02521
    Location:445 → 528
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:353 → 463
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:61 → 321
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:469 → 493
    TPR; TPR repeat [structural motif]
    cl40423
    Location:537 → 756
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_041769502.1 → XP_041625436.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (1) summary
    pfam05279
    Location:61 → 245
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  3. XM_041769501.1 → XP_041625435.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (5) summary
    TIGR02521
    Location:396 → 479
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:304 → 414
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:12 → 272
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:420 → 444
    TPR; TPR repeat [structural motif]
    cl40423
    Location:488 → 707
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_041769503.1 → XP_041625437.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (1) summary
    pfam05279
    Location:12 → 196
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein Strain
Heading Accession and Version

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