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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121498161, updated on 22-Mar-2024

Summary

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Gene symbol
SMPDL3B
Gene description
sphingomyelin phosphodiesterase acid like 3B
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 8 NC_054831.1 (121521430..121542130, complement)

Chromosome 8 - NC_054831.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L19-like Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene XK related 8 Neighboring gene replication protein A2 Neighboring gene thymocyte selection associated family member 2 Neighboring gene small Cajal body-specific RNA 1 Neighboring gene protein phosphatase 1 regulatory subunit 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054831.1 Chromosome 8 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054831.1 Reference ASM1834538v1 Primary Assembly

    Range
    121521430..121542130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041768236.1 → XP_041624170.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X1

    Conserved Domains (1) summary
    cd00842
    Location:23 → 323
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  2. XM_041768237.1 → XP_041624171.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X2

    Conserved Domains (1) summary
    cl13995
    Location:1 → 212
    MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain
Nucleotide Protein Strain
Heading Accession and Version

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