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GNPDA1 glucosamine-6-phosphate deaminase 1 [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121496906, updated on 22-Mar-2024

Summary

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Gene symbol
GNPDA1
Gene description
glucosamine-6-phosphate deaminase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See GNPDA1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 8 NC_054831.1 (86326483..86337636, complement)

Chromosome 8 - NC_054831.1Genomic Context describing neighboring genes Neighboring gene protocadherin 12 Neighboring gene ring finger protein 14 Neighboring gene 60S ribosomal protein L35a-like Neighboring gene Nedd4 family interacting protein 1 Neighboring gene tubulin beta-4B chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054831.1 Chromosome 8 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosamine-6-phosphate deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucosamine-6-phosphate isomerase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054831.1 Reference ASM1834538v1 Primary Assembly

    Range
    86326483..86337636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041765768.1 → XP_041621702.1  glucosamine-6-phosphate isomerase 1

    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional

  2. XM_041765769.1 → XP_041621703.1  glucosamine-6-phosphate isomerase 1

    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional
Nucleotide Protein Strain
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