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MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121493785, updated on 22-Mar-2024

Summary

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Gene symbol
MDGA2
Gene description
MAM domain containing glycosylphosphatidylinositol anchor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See MDGA2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 6 NC_054829.1 (49015284..49794090)

Chromosome 6 - NC_054829.1Genomic Context describing neighboring genes Neighboring gene pyruvate kinase PKM-like Neighboring gene uncharacterized LOC121493527 Neighboring gene tubulin alpha chain-like Neighboring gene 60S ribosomal protein L26-like Neighboring gene FXYD domain-containing ion transport regulator 5-like Neighboring gene DNA replication factor Cdt1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054829.1 Chromosome 6 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: MAM domain-containing glycosylphosphatidylinositol anchor protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054829.1 Reference ASM1834538v1 Primary Assembly

    Range
    49015284..49794090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041760034.1 → XP_041615968.1  LOW QUALITY PROTEIN: MAM domain-containing glycosylphosphatidylinositol anchor protein 2

    Conserved Domains (5) summary
    cd06263
    Location:820 → 991
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    smart00408
    Location:328 → 389
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:120 → 200
    IG; Immunoglobulin
    smart00410
    Location:422 → 499
    IG_like; Immunoglobulin like
    cd00096
    Location:332 → 336
    Ig; Ig strand B [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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