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GALC galactosylceramidase [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121493447, updated on 22-Mar-2024

Summary

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Gene symbol
GALC
Gene description
galactosylceramidase
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See GALC in Genome Data Viewer
Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 6 NC_054829.1 (14080536..14137357)

Chromosome 6 - NC_054829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121493874 Neighboring gene casein kinase II subunit beta-like Neighboring gene G protein-coupled receptor 65 Neighboring gene uncharacterized LOC121493689 Neighboring gene uncharacterized LOC121493942 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054829.1 Chromosome 6 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactocerebrosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054829.1 Reference ASM1834538v1 Primary Assembly

    Range
    14080536..14137357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041759317.1 → XP_041615251.1  galactocerebrosidase isoform X4

    Conserved Domains (1) summary
    cl23815
    Location:138 → 287
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain

  2. XM_041759314.1 → XP_041615248.1  galactocerebrosidase isoform X1

    Conserved Domains (1) summary
    cl23815
    Location:138 → 358
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain

  3. XM_041759319.1 → XP_041615253.1  galactocerebrosidase isoform X5

    Conserved Domains (1) summary
    cl23815
    Location:22 → 242
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain

  4. XM_041759316.1 → XP_041615250.1  galactocerebrosidase isoform X3

    Conserved Domains (1) summary
    cl23815
    Location:91 → 311
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain

  5. XM_041759315.1 → XP_041615249.1  galactocerebrosidase isoform X2

    Conserved Domains (1) summary
    cl23815
    Location:102 → 322
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain

  6. XM_041759318.1 → XP_041615252.1  galactocerebrosidase isoform X5

    Conserved Domains (1) summary
    cl23815
    Location:22 → 242
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain

  7. XM_041759320.1 → XP_041615254.1  galactocerebrosidase isoform X5

    Conserved Domains (1) summary
    cl23815
    Location:22 → 242
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain
Nucleotide Protein Strain
Heading Accession and Version

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