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HPGDS hematopoietic prostaglandin D synthase [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121492802, updated on 22-Mar-2024

Summary

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Gene symbol
HPGDS
Gene description
hematopoietic prostaglandin D synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See HPGDS in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 6 NC_054829.1 (92953704..92982187, complement)

Chromosome 6 - NC_054829.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene SNF2 related chromatin remodeling ATPase with DExD box 1 Neighboring gene PDZ and LIM domain 5 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like Neighboring gene bone morphogenetic protein receptor type 1B Neighboring gene elongation factor 1-alpha 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054829.1 Chromosome 6 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutathione transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutathione metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hematopoietic prostaglandin D synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054829.1 Reference ASM1834538v1 Primary Assembly

    Range
    92953704..92982187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041757985.1 → XP_041613919.1  hematopoietic prostaglandin D synthase

    Conserved Domains (2) summary
    cd10295
    Location:82 → 181
    GST_C_Sigma; C-terminal, alpha helical domain of Class Sigma Glutathione S-transferases
    cd03039
    Location:4 → 73
    GST_N_Sigma_like; GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of ...

  2. XM_041757986.1 → XP_041613920.1  hematopoietic prostaglandin D synthase

    Conserved Domains (2) summary
    cd10295
    Location:82 → 181
    GST_C_Sigma; C-terminal, alpha helical domain of Class Sigma Glutathione S-transferases
    cd03039
    Location:4 → 73
    GST_N_Sigma_like; GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of ...
Nucleotide Protein Strain
Heading Accession and Version

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