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CHST9 carbohydrate sulfotransferase 9 [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121490393, updated on 22-Mar-2024

Summary

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Gene symbol
CHST9
Gene description
carbohydrate sulfotransferase 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See CHST9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 1 NC_054824.1 (124322623..124559037, complement)

Chromosome 1 - NC_054824.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121475073 Neighboring gene potassium channel tetramerization domain containing 1 Neighboring gene uncharacterized LOC121490411 Neighboring gene uncharacterized LOC121490424 Neighboring gene aquaporin 4 Neighboring gene histone H2B type 2-E1-like Neighboring gene uncharacterized LOC121497048

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054824.1 Chromosome 1 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054824.1 Reference ASM1834538v1 Primary Assembly

    Range
    124322623..124559037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041754036.1 → XP_041609970.1  carbohydrate sulfotransferase 9 isoform X2

  2. XM_041754028.1 → XP_041609962.1  carbohydrate sulfotransferase 9 isoform X1

  3. XM_041754044.1 → XP_041609978.1  carbohydrate sulfotransferase 9 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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