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MMP25 matrix metallopeptidase 25 [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121488242, updated on 22-Mar-2024

Summary

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Gene symbol
MMP25
Gene description
matrix metallopeptidase 25
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See MMP25 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 3 NC_054826.1 (127118000..127134506, complement)

Chromosome 3 - NC_054826.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 205 Neighboring gene zinc finger and SCAN domain containing 10 Neighboring gene uncharacterized LOC121486554 Neighboring gene BICD family like cargo adaptor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054826.1 Chromosome 3 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054826.1 Reference ASM1834538v1 Primary Assembly

    Range
    127118000..127134506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041750676.1 → XP_041606610.1  matrix metalloproteinase-25

    Conserved Domains (3) summary
    PHA03247
    Location:44 → 301
    PHA03247; large tegument protein UL36; Provisional
    cd00094
    Location:639 → 833
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    cd04278
    Location:440 → 605
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...

  2. XM_041750673.1 → XP_041606607.1  matrix metalloproteinase-25

    Conserved Domains (3) summary
    PHA03247
    Location:44 → 301
    PHA03247; large tegument protein UL36; Provisional
    cd00094
    Location:639 → 833
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    cd04278
    Location:440 → 605
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...

  3. XM_041750675.1 → XP_041606609.1  matrix metalloproteinase-25

    Conserved Domains (3) summary
    PHA03247
    Location:44 → 301
    PHA03247; large tegument protein UL36; Provisional
    cd00094
    Location:639 → 833
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    cd04278
    Location:440 → 605
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...

  4. XM_041750674.1 → XP_041606608.1  matrix metalloproteinase-25

    Conserved Domains (3) summary
    PHA03247
    Location:44 → 301
    PHA03247; large tegument protein UL36; Provisional
    cd00094
    Location:639 → 833
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    cd04278
    Location:440 → 605
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...

  5. XM_041750671.1 → XP_041606605.1  matrix metalloproteinase-25

    Conserved Domains (3) summary
    PHA03247
    Location:44 → 301
    PHA03247; large tegument protein UL36; Provisional
    cd00094
    Location:639 → 833
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    cd04278
    Location:440 → 605
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...

  6. XM_041750672.1 → XP_041606606.1  matrix metalloproteinase-25

    Conserved Domains (3) summary
    PHA03247
    Location:44 → 301
    PHA03247; large tegument protein UL36; Provisional
    cd00094
    Location:639 → 833
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    cd04278
    Location:440 → 605
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
Nucleotide Protein Strain
Heading Accession and Version

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