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HABP4 hyaluronan binding protein 4 [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121485338, updated on 22-Mar-2024

Summary

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Gene symbol
HABP4
Gene description
hyaluronan binding protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See HABP4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 2 NC_054825.1 (127565097..127607069, complement)

Chromosome 2 - NC_054825.1Genomic Context describing neighboring genes Neighboring gene peroxiredoxin like 2C Neighboring gene cell division cycle 14B Neighboring gene uncharacterized LOC121480273 Neighboring gene ATP synthase subunit ATP5MJ, mitochondrial-like Neighboring gene histone H3.3A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054825.1 Chromosome 2 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intracellular hyaluronan-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054825.1 Reference ASM1834538v1 Primary Assembly

    Range
    127565097..127607069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041745552.1 → XP_041601486.1  intracellular hyaluronan-binding protein 4 isoform X2

    Conserved Domains (2) summary
    pfam04774
    Location:215 → 312
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:18 → 166
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

  2. XM_041745551.1 → XP_041601485.1  intracellular hyaluronan-binding protein 4 isoform X1

    Conserved Domains (2) summary
    pfam04774
    Location:216 → 313
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:18 → 167
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal
Nucleotide Protein Strain
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